DreEX0018857 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53222101-53225311:-
Coord C1 exon
chr1:53225195-53225311
Coord A exon
chr1:53224937-53224995
Coord C2 exon
chr1:53222101-53222634
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGGCATCCGTTACAGGTA
3' ss Score
9.17
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGATGAAGCTGAACAACAGGATTCTGCAGCTGCTGGGTCTGCGGTTCGCAGATGAGAAATTAGAAATCGATTTTGACGATTACCTGACGTGCATCGTGCGTCTGGAGAACATGTTTC
Seq A exon
GTATTTTCCAGGCCTTAGATGCACAGAAGAAAGGAGAGGTCAGCCTGAACATGCATCAG
Seq C2 exon
TTCCTGTTGTTGACCATGAACGTCTGAGCTGGAAAATAGGGATGGATATACGGATCAACTGGGGATTTTCAATCTTGTGCTGAATTCTGAACACACACACGCACACACATAAACAACCTCTCTCTCTCTTTCTCTCATTCATAAACACACACTCACACTCTCACAAAAACACACACCACAGTTTTGTATGTTTGCTTTGTCTTTCCCATCGCTACAGCCTACATGATGTTTGTGAAAGTTTAACACTGATTGTTTTGTGAGCAGTGTTTACGGCACGTTTACTGTAATTTGTCTGTGATTTGAGGCATATTCACCCTGTATGGATGGTTCAAGAGTCTAATGATAATTGTGAGATGTTTGTATTCTTCTCAAGGCTGCTAAACCGCTACGTTTTCATCATGAAAGGTGCATGCATAAATAATACAAATGAGAATTTAAATGAATTTTACAAAAGGAAATAAAGTGTGGCTCTGTTTTGGACGAGCTGTAACGGAGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'21-21,'21-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(11.8=10.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGATTCTGCAGCTGCTG
R:
CCAGCTCAGACGTTCATGGTC
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]