HsaEX6037294 @ hg19
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:1486]
Coordinates
chr1:230904926-230910377:+
Coord C1 exon
chr1:230904926-230905009
Coord A exon
chr1:230907760-230907845
Coord C2 exon
chr1:230910300-230910377
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCATGCTTTTCCCTTCTAGGTA
3' ss Score
12.11
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACCAGAAGTGCTGCAGAATCTGAGGCCCGGACGCCGTTTGGTCTTATTAAGGGTCATGCCTACAGTGTAACGGGAATTGACCAG
Seq A exon
GTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGGGGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAG
Seq C2 exon
TTCTCCGGAGTGGCGTTCTGTTGGTCCAGCTGAGCAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.7=100)
A:
PF0064816=Peptidase_C2=FE(11.1=100)
C2:
PF0064816=Peptidase_C2=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAGTGCTGCAGAATCTG
R:
GAATTCCCCATCATCCAGAGCA
Band lengths:
160-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)