DreEX6033725 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53235689-53236944:-
Coord C1 exon
chr1:53236861-53236944
Coord A exon
chr1:53236694-53236779
Coord C2 exon
chr1:53235689-53235766
Length
86 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTGTCTCTTCAGGTC
3' ss Score
12.35
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATCACTAGTTCTGCTGAATCTGAAGCCCAAACCTCTACTGGTCTGGTGAAAGGCCACGCTTACTCCGTCACTGGAGTGGAAGAG
Seq A exon
GTCAACTACAGAGGAGCGAAGGTCCAGCTGATTCGTGTACGTAACCCCTGGGGTCAGGTGGAGTGGAACGGGCCGTGGAGTGACAA
Seq C2 exon
TTCGAGAGAATGGACTGTCATTGACAGCTCAGAGAAGAAACGATTGCTGCAAAACTCCCTGGATGATGGAGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.1=100)
A:
PF0064816=Peptidase_C2=FE(9.5=100)
C2:
PF0064816=Peptidase_C2=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGTTCTGCTGAATCTGAAGCC
R:
CAGAACTCTCCATCATCCAGGG
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]