RnoEX6061186 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57357303-57362177:+
Coord C1 exon
chr19:57357303-57357386
Coord A exon
chr19:57358798-57358883
Coord C2 exon
chr19:57362100-57362177
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGATGCTTTTTCCTTGCAGGTA
3' ss Score
12
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACCCTGAATGCCTCAGAATCTGAAGCCCGCACACCTTTGGGCCTCATTAAGGGCCATGCCTACACTGTGACTGGACTCGACCAG
Seq A exon
GTAAACTTCCACGGCCAGAGAATCAAGCTCATCAGAGTCCGTAACCCTTGGGGCCAGGTGGAATGGAACGGGCCATGGAGCGACAG
Seq C2 exon
CTCTCCTGAGTGGCGCTCCATGAGCCTGGAGGAGCAGAAGCGCCTAGGTCACACCGCCCTTGACGATGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.148
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.1=100)
A:
PF0064816=Peptidase_C2=FE(9.5=100)
C2:
PF0064816=Peptidase_C2=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCAGAATCTGAAGCCC
R:
AATTCTCCATCGTCAAGGGCG
Band lengths:
152-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]