HsaEX6040354 @ hg19
Exon Skipping
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50034243-50042096:+
Coord C1 exon
chr13:50034243-50034368
Coord A exon
chr13:50035233-50035298
Coord C2 exon
chr13:50042000-50042096
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTGTCTTTAACAGAAT
3' ss Score
11.74
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCGATGCAAAAACTTTCTGGATGGAGCTAGAAGATGATGGAAAAGTGGACTTCATTTTTGAACAAGTACAAAATGTGCTGCAGTCACTGAAACAAAAGATCAAAGATGGGTCTGCCACCAATAAAG
Seq A exon
AATACATCCAAGCAATGATTCTAGTGAATGAAGCAACTATAATTAACAGTTCAACATCAATAAAGG
Seq C2 exon
ATCCTATGCCTGTGACTCAGAAGGAACAGGAAAACAAATCCAATGCATTTCCCTCTACATCATGTGAAAACTCCTTTCCAGAAGACTGTACATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-'4-9,'4-5,5-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.094 C2=0.576
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=PU(50.6=97.7),PF0178512=Closter_coat=PU(44.0=76.7)
A:
PF0109514=Pectinesterase=FE(26.5=100),PF0178512=Closter_coat=FE(29.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAAACTTTCTGGATGGAGC
R:
TGCATTGGATTTGTTTTCCTGTTCC
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)