GgaEX7001261 @ galGal4
Exon Skipping
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168507298-168509419:+
Coord C1 exon
chr1:168507298-168507420
Coord A exon
chr1:168508463-168508528
Coord C2 exon
chr1:168509317-168509419
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTCTACATAGAAT
3' ss Score
9.07
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGATTTGAAGGCATTTTGGACGCAACTGGAAAGTAGAAGAGTGGATCTCATATTTGAGCAGGTGCAGGAAGTACTGCTGCTGCTAAAGGAAAAGATCAAGAATGGAACTGCCACAAATCAAG
Seq A exon
AATGCTGGCAGGCTTGGGCATTGGTGAACGAAGCTGATCTGGGTGATCTTTTAACGTTGACAAATG
Seq C2 exon
TAAATGATGTTCTTGATGGAGAGGATATACAGGAACCCAAACCTAAATCACAGCGTGTTGTTACGGATGACAGCAGTGGAAACTCTGTAGAGGGTTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006-'9-5,'9-4,11-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCATTTTGGACGCAACTG
R:
TCCGTAACAACACGCTGTGAT
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]