MmuEX0041869 @ mm10
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:59423388-59431268:-
Coord C1 exon
chr14:59431143-59431268
Coord A exon
chr14:59426489-59426554
Coord C2 exon
chr14:59423388-59423484
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTCCAGACT
3' ss Score
12.94
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTAATGTTTGAGAAAACACAAAATGTCCTACATTCACTGAAACAGAAGATAAAGGATGGGTCTGCCACAAATGGAG
Seq A exon
ACTATGTCCAAGCAATGAATCTAGTAAATGAAGCCACTCTGAGTAACACGCAAACACTGGAAAAGG
Seq C2 exon
ATCATACACCTGTGACTCAGAGTGAACAGGAAAACAAATCAAGTGCGGTTCCCTCTGCATCATGTGACAACTCCTGTCCTAAGGGCTGTACTATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350_MULTIEX1-1/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.432 C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000161459fB16516
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGACTTTCTGGATGGAGCT
R:
GGGAACCGCACTTGATTTGTT
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types