RnoEX0079930 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39731970-39738667:-
Coord C1 exon
chr15:39738542-39738667
Coord A exon
chr15:39735101-39735166
Coord C2 exon
chr15:39731970-39732066
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCAACAGACT
3' ss Score
13.4
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTTATGTTTGAGAAAGCACAAGATGTCCTACATTCACTGAAACAGAAGATAAAAGATGGGTCTGCCACAAATGGAG
Seq A exon
ACTATGTCCAAGCAATGGTTCTGGTAAACGAAGCAACTCTGAGTAACAGTCAGACACTGGAAAAAG
Seq C2 exon
ATCATACACCTGTGACTCAGAATGAACAGAAAAACAAATCAAATGTGTTTCCCTCTACATCATGTGAAAACCCCTCCCCTGAGGACTGTATCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.209 C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAGCTACAAGATGATGG
R:
GGGGTTTTCACATGATGTAGAGGG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]