BtaEX6055858 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19118147-19123574:+
Coord C1 exon
chr12:19118147-19118272
Coord A exon
chr12:19119624-19119689
Coord C2 exon
chr12:19123478-19123574
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCTTCCTTAACAGAAT
3' ss Score
11.37
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGATGCAAAAAGTTTCTGGATGGAGCTGGAAGATGATGGGAAAGTGGATTTCATATTTGAACAAGTGCAAAATGTGCTGCAGTCACTGAAACAAAAGATCAAAGATGGGTCTGCCACAAATAAAG
Seq A exon
AATACATCCAAGCAATGATTCTAGTAAAAGATGCAATTATAAACCACAATTCAACATTGATAAAGG
Seq C2 exon
ATCATAGATCTGTGACCAAGAACGCAGAAGAAAACAAGTCAAGTTCATTGCCCTCGACATCATATGAAGACTTCTTTCCAAAAGACTGCACCTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.022 C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTGGAAGATGATGGGA
R:
TGATGTCGAGGGCAATGAACT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]