MmuEX6041859 @ mm10
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:59419001-59431268:-
Coord C1 exon
chr14:59431143-59431268
Coord A exon
chr14:59423388-59423484
Coord C2 exon
chr14:59419001-59419561
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTTTGTACTTTTCCCTGTAGATC
3' ss Score
10.38
5' ss Seq
CCCGTATGT
5' ss Score
5.55
Exon sequences
Seq C1 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTAATGTTTGAGAAAACACAAAATGTCCTACATTCACTGAAACAGAAGATAAAGGATGGGTCTGCCACAAATGGAG
Seq A exon
ATCATACACCTGTGACTCAGAGTGAACAGGAAAACAAATCAAGTGCGGTTCCCTCTGCATCATGTGACAACTCCTGTCCTAAGGGCTGTACTATCCC
Seq C2 exon
ATCTCCAGGAAAAAAAGTATTCCTCCCTGTGAAGAATAAAGCTGACAATTTAGTGAAAAAGGAAGCCCCACTGCATATATCTTTCCATCGCCATATCTGCTCCAGGACTTGTCTAATGGAAACCCCACTGTCCTTGAAGGGAGAAAACCCCCTGCAGCTACCAATCAGATGTCACTTCCAAAGACGACATGCAAAGACAAACTCTCATTCTTCTGCCCTCCATGTGAATTATAAAACGCCCTGTGGACGGAATCTACGAAACATGGAGGAAGTTTTCCATTACCTGCTTGAAACAGAGTGTAACTTTTTATTCACAGACAACTTCTCTTTCAATACTTATGTCCAGTTGACTCGGAATCACCCAAAGCAAAATGAAGTTGTTTCTGACGTGGATATTAGTAATGGAGTGGAATCAGTGTCGATTCCTTTCTGTAATGAAATTGACAACAGTAAACTTCCACGGTTTAAGTATAGAAATACAGTATGGCCCCGAATATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.530 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0142914=MBD=WD(100=38.8),PF0503311=Pre-SET=PU(49.1=29.8)
Main Skipping Isoform:
ENSMUST00000161459fB16516
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGGTCTGCCACAAATG
R:
TCTCCCTTCAAGGACAGTGGG
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types