BtaEX0032091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19119624-19128093:+
Coord C1 exon
chr12:19119624-19119689
Coord A exon
chr12:19123478-19123574
Coord C2 exon
chr12:19127530-19128093
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTCGTAATTTTTTCATGTAGATC
3' ss Score
7.19
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
AATACATCCAAGCAATGATTCTAGTAAAAGATGCAATTATAAACCACAATTCAACATTGATAAAGG
Seq A exon
ATCATAGATCTGTGACCAAGAACGCAGAAGAAAACAAGTCAAGTTCATTGCCCTCGACATCATATGAAGACTTCTTTCCAAAAGACTGCACCTCTCT
Seq C2 exon
ATCTACAGAAAACCAGGAAATTCCCCCTATGGAAAATAAAGTTGCAGACTTTAGAGAAAAAGAATCTTCTTTAAATTTATCTTACCAAAAGCATCAGTGCTCTGGCTCCTGTCTGATGAAAATGCCATTTACCTTCAAGGGGGAAAACCCTCTGCAGCTACCAATCAAATGCCATTTCCAAAGACGACACGCGAAGACAAACTCTCATTCTTCAGCACTCCACGTGAGTTATAAAACCCCTTGTGGAAGGAGTCTGCGAAACATGGAGGAAGTTTTTCGTTACCTGCTTGAGACAGAGTGTAACTTTCTATTTACAGATAACTTTTCTTTCAATACCTATGCTCAGTTGACTCGGAATTACCCAAAGGAAGAAGAAATTGTTTCTGATGTGGATATTAGCAATGGCGTGGAATCGGTGCCCATTTCTTTCTGTAATGAAATTGACAATAGAAAACTTCCACAGTTTAAGTACAGAAAGACTATGTGGCCACGAGCATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.530 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0142914=MBD=WD(100=39.2),PF0503311=Pre-SET=PU(49.6=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATGATTCTAGTAAAAGATGCA
R:
TCATCAGACAGGAGCCAGAGC
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development