MmuEX6041859 @ mm9
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60037838-60045391:-
Coord C1 exon
chr14:60045326-60045391
Coord A exon
chr14:60042225-60042321
Coord C2 exon
chr14:60037838-60038398
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTTTGTACTTTTCCCTGTAGATC
3' ss Score
10.38
5' ss Seq
CCCGTATGT
5' ss Score
5.55
Exon sequences
Seq C1 exon
ACTATGTCCAAGCAATGAATCTAGTAAATGAAGCCACTCTGAGTAACACGCAAACACTGGAAAAGG
Seq A exon
ATCATACACCTGTGACTCAGAGTGAACAGGAAAACAAATCAAGTGCGGTTCCCTCTGCATCATGTGACAACTCCTGTCCTAAGGGCTGTACTATCCC
Seq C2 exon
ATCTCCAGGAAAAAAAGTATTCCTCCCTGTGAAGAATAAAGCTGACAATTTAGTGAAAAAGGAAGCCCCACTGCATATATCTTTCCATCGCCATATCTGCTCCAGGACTTGTCTAATGGAAACCCCACTGTCCTTGAAGGGAGAAAACCCCCTGCAGCTACCAATCAGATGTCACTTCCAAAGACGACATGCAAAGACAAACTCTCATTCTTCTGCCCTCCATGTGAATTATAAAACGCCCTGTGGACGGAATCTACGAAACATGGAGGAAGTTTTCCATTACCTGCTTGAAACAGAGTGTAACTTTTTATTCACAGACAACTTCTCTTTCAATACTTATGTCCAGTTGACTCGGAATCACCCAAAGCAAAATGAAGTTGTTTCTGACGTGGATATTAGTAATGGAGTGGAATCAGTGTCGATTCCTTTCTGTAATGAAATTGACAACAGTAAACTTCCACGGTTTAAGTATAGAAATACAGTATGGCCCCGAATATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-'5-7,'5-5,9-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.505 C2=0.016
Domain overlap (PFAM):
C1:
PF127032=plasmid_Toxin=PD(24.5=56.5)
A:
NO
C2:
PF0142914=MBD=WD(100=38.8),PF0503311=Pre-SET=PU(49.1=29.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCTGAGTAACACGCAA
R:
TCTCCCTTCAAGGACAGTGGG
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: