GgaEX7001260 @ galGal4
Exon Skipping
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168508463-168510649:+
Coord C1 exon
chr1:168508463-168508528
Coord A exon
chr1:168509317-168509419
Coord C2 exon
chr1:168510083-168510649
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTGTATCCCAATTTTTTCAGTAA
3' ss Score
6
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AATGCTGGCAGGCTTGGGCATTGGTGAACGAAGCTGATCTGGGTGATCTTTTAACGTTGACAAATG
Seq A exon
TAAATGATGTTCTTGATGGAGAGGATATACAGGAACCCAAACCTAAATCACAGCGTGTTGTTACGGATGACAGCAGTGGAAACTCTGTAGAGGGTTCACACAG
Seq C2 exon
CAAAAAGGAGAAGATTGAAAAATCAGATTCAGAGAGTGAGGAAGCATCGAGTGAAATTCAACGTGTACCTTTAAATCCCCGCTATCGGATCCACAAGTGCTCCAGTGCATGTCTCTCCAACAGAGCAGTAAGCTCCTACAAGGGTGAAAATCCTCTTAAGATACCAATACTGTTTCACTTTCAAAGACGCCATGCGAAAGCAGACTGCCTTTCAAAATCACTGGATGTGCATTATAAAGCTCCCTGTGGCAGAAGTCTGAGAAGTTTTCAAGATGTTCAAAGTTATTTGTTTGAGACAAAATGTGATTTCTTATTTATTGATCACTTCTCTTTTAACACATACGTCCTGTTGGGCAGGAACACTGTAAATCCAGAACCCCTTGTATTTGATCTTGATATCAGCAATGGAGCTGAATCTGTGCCTATTTCCTTCTGTAATGACATTGACCGTGCCAGATTACCTTATTTTAAATACCGGAGGGCATCGTGGCCTCGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006-'11-6,'11-5,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.857 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0142914=MBD=WD(100=37.4),PF0503311=Pre-SET=PU(49.1=30.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACGAAGCTGATCTGGG
R:
AAAGGCAGTCTGCTTTCGCAT
Band lengths:
256-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]