RnoEX0079931 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39727625-39735166:-
Coord C1 exon
chr15:39735101-39735166
Coord A exon
chr15:39731970-39732066
Coord C2 exon
chr15:39727625-39728185
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTGTACTTTTCCCTGTAGATC
3' ss Score
11.29
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
ACTATGTCCAAGCAATGGTTCTGGTAAACGAAGCAACTCTGAGTAACAGTCAGACACTGGAAAAAG
Seq A exon
ATCATACACCTGTGACTCAGAATGAACAGAAAAACAAATCAAATGTGTTTCCCTCTACATCATGTGAAAACCCCTCCCCTGAGGACTGTATCATTCT
Seq C2 exon
ATCTACAGGAAGAAAAGGATTCCTCCCTGTGAACAATAAAACTGAAGGTTCGGGGGAGAAGGAGCCCCCTTTGCATGCATCTTTCCATCACCATGTGTGCTCCAGTGCTTGCCTGAGGGAAGCGCCACTGTCCTTGAAGGGAGAAAACCCTCTGCAGCTGCCACTCAGATGTCACTTCCAGAGACGACATGCAAAGACAAACTCTCCCTCTGCTGCCCTCCATGTAAACTATAGAACGCCCTGCGGACGGAGTCTACGAAACATGGAGGAAGTTTTCCATTACCTGCTTGAAACGGAGTGTAACTTTTTATTCACAGACAACTTTTCTTTTAATACTTATGTTCAGTTAACTCGGAATCACCCAAAGCAAAATGAAGTTGTTTCTGATGTGGATATTAGTAATGGAGTGGAATCAGTGTCGATTTCTTTCTGTAATGAGGTTGACAATAGTAAACTCCCACAGTTTAAGTATAGGACGACAGTATGGCCCCGAGCATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.611 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0142914=MBD=WD(100=38.8),PF0503311=Pre-SET=PU(49.1=29.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGTTCTGGTAAACGAAGC
R:
CTTCCCTCAGGCAAGCACTG
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]