HsaEX6056046 @ hg19
Exon Skipping
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49753826-49758327:+
Coord C1 exon
chr3:49753826-49753910
Coord A exon
chr3:49757944-49758086
Coord C2 exon
chr3:49758233-49758327
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTGCACCCTCCCCTACCTAGGAG
3' ss Score
8.58
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCCTAGAGAGCGTGGACCACTATCCCATTCTGGTGGCAGTGACGGGCATCCTGGTGCAGCTCCTGGTGCGTGGCCCAGCCTCAGA
Seq A exon
GAGAGAGCAAGCCACATCAGTGCTCCTGGCAGATCCCTGCTTCCAGCTACGCTCAATATGCTATCTCCTGGGACAGCCAGAGCCCCCAGCACCTGGCACTGCTCTGCCAGCCCCTGACCGGAAGCGCTTCTCCCTGCAGAGCT
Seq C2 exon
ATGCGGATTATATCAGTGCCGATGAGCTGGCCCAAGTGGAACAGATGCTGGCGCACCTGACCTCTGCATCTGCCCAGGCAGCAGCTGCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-'45-46,'45-44,48-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(14.7=100)
A:
PF042167=FdhE=PU(23.9=53.1)
C2:
PF042167=FdhE=FE(28.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGAGAGCGTGGACCACTA
R:
CCTGGGCAGATGCAGAGGTC
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)