MmuEX0040002 @ mm10
Exon Skipping
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:108052214-108056121:-
Coord C1 exon
chr9:108056037-108056121
Coord A exon
chr9:108052445-108052587
Coord C2 exon
chr9:108052214-108052308
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGCACCCTCCCCTACCTAGGAC
3' ss Score
8.55
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGCTGGAGAGTGTGGACCACTACCCTATCCTGGTGGCAGTGACTGGCATCCTGGTACGCCTCCTGGTGCACGGCCCAACCTCAGA
Seq A exon
GACAGAGCAAGCCACCTCTGTGCTCCTGGCTGATCCCTGCTTCCAGCTTCGTTCCATATGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGCACTACCTTGCCTGCCCCTGACCGGAAACGCTTCTCTCTACAGAGTT
Seq C2 exon
ATACAGATTATATCAGCGCTGAGGAGCTGGCCCAGGTGGAACAGATGCTGGCTCACCTGACCGCTGCATCTGCCCAGGCGGCCGCCGCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF042167=FdhE=PU(14.6=28.6)
C2:
PF042167=FdhE=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGAGTGTGGACCA
R:
CTGGGCAGATGCAGCGGT
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types