RnoEX0076241 @ rn6
Exon Skipping
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116829612-116833558:-
Coord C1 exon
chr8:116833474-116833558
Coord A exon
chr8:116829837-116829979
Coord C2 exon
chr8:116829612-116829706
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATGCGCCCTCCCTATCCAGGAC
3' ss Score
11.63
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTGGAGAGTGTGGACCACTACCCTATCTTGGTGGCAGTGACCGGCATCCTGGTACGCCTCCTGGCACACGGTCCATCCTCAGA
Seq A exon
GACAGAGCAAGCCACATCTGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCTATACGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGCTCCGCCTTGCCTGCCCCTGACCGGAAACGCTTCTCTCTACAGAGCT
Seq C2 exon
ATGCAGATTACATCAGTGCTGAGGAGCTGGCCCAGGTGGAACGGATGCTGGCTCACCTGACCGCGGCATCGGCCCAGGCAGCAGCTGCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378-'66-70,'66-68,69-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF042167=FdhE=PU(23.9=53.1)
C2:
PF042167=FdhE=FE(28.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGAGTGTGGACCA
R:
GATGCCGCGGTCAGGTGA
Band lengths:
155-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]