GgaEX6009800 @ galGal4
Exon Skipping
Gene
ENSGALG00000002486 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr12:2373863-2382793:+
Coord C1 exon
chr12:2373863-2373947
Coord A exon
chr12:2382433-2382575
Coord C2 exon
chr12:2382699-2382793
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCGTGTCTGTCCCTTTGCAGGGC
3' ss Score
12.59
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GACTGGAGAGCGTGGACCATTACCCGATCCTCGTAGCTGTGACGGGAATACTGGTCCGGCTGCTGGTGGACACTGATGCTCAGGG
Seq A exon
GGCTGAGCGTGCGACAGCGGTGCTGCTGGCGGACCCCTGCTTCCAGCTGCGCTCCATCCAGTACCTGCTGGGACACGCCGAACCTGCAGCCATGGCAGCAGCTGCTGCGGCCACAGAGAAACGCCACTTCTCCCTGAGCACGT
Seq C2 exon
ACACGGAGTACATCAGTGCCGAGGAGCTGTCCAAGGTGGACACGATGCTGAGCCACCTGAGTGAGGAGTCCAAGCAGGCGGCTGCCACCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486-'40-48,'40-47,44-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(14.3=100)
A:
PF042167=FdhE=FE(24.5=100)
C2:
PF042167=FdhE=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGAGCGTGGACCATTA
R:
CCTGCTTGGACTCCTCACTCA
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]