BtaEX6095362 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51055531-51059534:-
Coord C1 exon
chr22:51059450-51059534
Coord A exon
chr22:51055773-51055915
Coord C2 exon
chr22:51055531-51055625
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTGTACCCTCTCCTACCTAGGAC
3' ss Score
9.18
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCCTGGAGAGTGTGGACCACTACCCCATTCTGGTGGCAGTGACCGGCATCCTGGTGCGGCTCCTGGTGCATGGCCCAGCCTCAGG
Seq A exon
GACGGAGAGAGCCACGTCAGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCCATATCTTACCTGTTGGGGCAGCCAGAGCCCCCAGCCCCTGGCACTGCTTTGCCTGCCCCTGACCGGAAGCATTTCTCCCTACAGAGTT
Seq C2 exon
ATACAGATTACATCAATGTGGAGGAGCTGGCCCAGGTGGAACAGATGTTGGCACACCTAACCTCTGCATCTGCGCAGGCGGCAGCTGCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588-'44-55,'44-54,48-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF042167=FdhE=PU(3.5=6.1)
C2:
PF042167=FdhE=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAGAGTGTGGACCA
R:
GATGCAGAGGTTAGGTGTGCC
Band lengths:
155-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]