DreEX0062469 @ danRer10
Exon Skipping
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34416098-34515033:-
Coord C1 exon
chr22:34514949-34515033
Coord A exon
chr22:34434060-34434190
Coord C2 exon
chr22:34416098-34416192
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGTTTGCTCCTCCAGTGT
3' ss Score
8.99
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GCCTGGAGAGTGTCGATCATTATCCCATCCTGGTGGCAGTTACAGGGATATTGGTGCGCATTTTGGTCGACTCCAACAAACAAGG
Seq A exon
TGTCTCGAGGGCCGCGTCTGTGCTGCTGTCGGACCCCTGTTTCCAGCTGCGCTCCATCCAGTACCTGCTGGGAGAAGGAGAAAGTGGATCCTCCACCGCCACCGACCGTAAACACTTCTCTCTGCACACAT
Seq C2 exon
ATACAGACTACATCAGCACGGAGGAGGAGCAGAAGGTTGAACAGATGCTAACTTTCCTGACGGAGGAGTCCAAGCAGGCGGCAGCCAGTACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269-'20-23,'20-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAGAGTGTCGATCATT
R:
CTGCTTGGACTCCTCCGTCAG
Band lengths:
162-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]