HsaEX6056150 @ hg38
Exon Skipping
Gene
ENSG00000001617 | SEMA3F
Description
semaphorin 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr3:50183420-50185531:+
Coord C1 exon
chr3:50183420-50183564
Coord A exon
chr3:50184592-50184814
Coord C2 exon
chr3:50185443-50185531
Length
223 bp
Sequences
Splice sites
3' ss Seq
CACTCGCCACCTGTCCACAGTGC
3' ss Score
6.73
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCACG
Seq A exon
TGCCCTGGTGGAACCTTCACGCCATCTATGAAGTCCACCAAGGATTATCCTGATGAGGTGATCAACTTCATGCGCAGCCACCCACTCATGTACCAGGCCGTGTACCCTCTGCAGCGGCGGCCCCTGGTAGTCCGCACAGGTGCTCCCTACCGCCTTACCACTATTGCCGTGGACCAGGTGGATGCAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCACAG
Seq C2 exon
ACCGCGGGACAGTGCAGAAGGTCATTGTGCTGCCCAAGGATGACCAGGAGTTGGAGGAGCTCATGCTGGAGGAGGTGGAGGTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000001617-'32-28,'32-26,39-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.147 C2=0.033
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(14.6=95.9)
A:
PF0140314=Sema=FE(15.6=100)
C2:
PF0140314=Sema=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTGTTCCGAGGCTCT
R:
TTGAAGACCTCCACCTCCTCC
Band lengths:
233-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains