GgaEX1056946 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3183771-3184954:+
Coord C1 exon
chr12:3183771-3183915
Coord A exon
chr12:3183997-3184219
Coord C2 exon
chr12:3184866-3184954
Length
223 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTGCCCGCCCACAGTGC
3' ss Score
9.7
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTTACTCCATGGCCGACATCCGCATGGTGTTCAATGGGCCCTTCGCGCACAAGGAGGGTCCCAACTACCAGTGGATGCCCTACACGGGCAAAATGCCCTACCCCCGGCCGGGCACC
Seq A exon
TGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGACTACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTCTGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGAGGTGCTTTTCCTGGGCACAG
Seq C2 exon
ATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGGTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-'19-26,'19-24,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.147 C2=0.067
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.9=100)
A:
PF0140314=Sema=FE(16.7=100)
C2:
PF0140314=Sema=FE(6.6=100)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGTGTTCAAGGGCTCG
R:
CACCTCGATCTCCTCCAGCAT
Band lengths:
228-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]