BtaEX6095222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018307 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr22:50735427-50737361:-
Coord C1 exon
chr22:50737217-50737361
Coord A exon
chr22:50736151-50736373
Coord C2 exon
chr22:50735427-50735515
Length
223 bp
Sequences
Splice sites
3' ss Seq
CGCTCATCACCTGCCTGCAGTGC
3' ss Score
6.25
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCTGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGACATCCGCATGGTCTTCAATGGGCCCTTTGCCCACAAGGAGGGCCCCAACTACCAGTGGATGCCCTTCTCAGGAAAGATGCCCTACCCACGGCCCGGCACG
Seq A exon
TGCCCTGGCGGAACCTTCACGCCGTCCATGAAGTCCACCAAAGACTACCCTGATGAAGTCATCAACTTCATGCGCAGCCACCCGCTCATGTACCAGGCCATCTACCCTCTGCAGCGGCGGCCCCTGGTGGTCCGCACAGGCGCGCCCTACCGTCTCACCACTGTGGCCGTGGACCAGGTGGACGCAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCACAG
Seq C2 exon
ACCGCGGGACAGTGCAGAAGGTCATCGTGCTGCCTAAGGACGACCAGGAGATGGAGGAGCTCATGCTAGAGGAGGTCGAGGTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018307-'14-19,'14-17,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.147 C2=0.100
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.1=100)
A:
PF0140314=Sema=FE(15.6=100)
C2:
PF0140314=Sema=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTTCCGAGGCTCTG
R:
GACCTCGACCTCCTCTAGCAT
Band lengths:
228-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]