HsaEX6063091 @ hg38
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr9:127459003-127462373:+
Coord C1 exon
chr9:127459003-127459071
Coord A exon
chr9:127461173-127461257
Coord C2 exon
chr9:127462252-127462373
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTCCTCTTTCTTAGGTC
3' ss Score
11.28
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTCTAGATCTCCACGATAATCAGCTGACAGCCCTTCCTGACGATCTGGGGCAGCTGACTGCCCTCCAG
Seq A exon
GTCTTAAACGTGGAAAGGAATCAACTGATGCAGCTCCCACGTTCCATTGGGAACCTGACCCAGCTCCAGACTCTCAATGTTAAAG
Seq C2 exon
ACAACAAGCTGAAGGAGCTTCCAGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACATCAGTGGAAACGAGATCCAGAGATTGCCGCAGATGCTGGCTCACGTTCGAACCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356-'12-16,'12-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(46.8=100)
A:
PF127992=LRR_4=PD(40.4=65.5),PF127992=LRR_4=PU(20.0=31.0)
C2:
PF127992=LRR_4=PD(77.8=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATAATCAGCTGACAGCCC
R:
TTCGAACGTGAGCCAGCATC
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains