BtaEX6046240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98201818-98204182:+
Coord C1 exon
chr11:98201818-98201886
Coord A exon
chr11:98202980-98203064
Coord C2 exon
chr11:98204061-98204182
Length
85 bp
Sequences
Splice sites
3' ss Seq
GCATTCTCCCTCTCTCTTAGGTC
3' ss Score
10.81
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTCTGGATCTTCATGATAACCAGCTGACAGCCCTTCCCGATGACATAGGGCAGCTGACGGCCCTGCAG
Seq A exon
GTCTTGAACATGGAAAGGAATCAACTGACCTATCTCCCACGTTCCATTGGGAACCTGATCCAGCTCCAGACCCTCAATGTGAAAG
Seq C2 exon
ACAACAGGCTGAAGGAGCTGCCGGACACGCTGGGGGAGCTTCGGAGCCTGCGCACTCTGGACATCAGTGAGAACGAGATTCAGAGGCTGCCCCGGATGCTGGCACATGTCCGAACCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-'7-9,'7-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(47.8=100)
A:
PF127992=LRR_4=PD(39.1=62.1),PF127992=LRR_4=PU(20.0=31.0)
C2:
PF127992=LRR_4=PD(77.8=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAACCAGCTGACAGCCCT
R:
TTCGGACATGTGCCAGCATC
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]