MmuEX6100659 @ mm10
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32953364-32955249:-
Coord C1 exon
chr2:32955181-32955249
Coord A exon
chr2:32954202-32954286
Coord C2 exon
chr2:32953364-32953485
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTCACTGTTGTCTTTCTTAGGTA
3' ss Score
11.13
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTCTGGATCTCCATGAGAACCAGCTGACAGCCCTTCCTGATGACATGGGGCAGCTGACAGTCCTGCAG
Seq A exon
GTATTGAATGTGGAAAGAAATCAACTCACGCATCTCCCTCGCTCTATTGGGAACCTGCTGCAGCTCCAGACGCTCAATGTAAAAG
Seq C2 exon
ACAACAAGCTGAAGGAGCTTCCTGACACCCTGGGGGAGCTGCGGAGCCTGCGGACACTCGACATTAGTGAGAACGAGATTCAGAGACTTCCCCAGATGCTGGCGCACGTGCGGACCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-'17-16,'17-15,22-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(48.9=100)
A:
PF127992=LRR_4=PD(37.8=58.6),PF127992=LRR_4=PU(18.2=27.6)
C2:
PF127992=LRR_4=PD(79.5=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCTCCATGAGAACCAGC
R:
CAGCATCTGGGGAAGTCTCTG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types