DreEX6011785 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32279993-32281380:-
Coord C1 exon
chr5:32281312-32281380
Coord A exon
chr5:32280748-32280832
Coord C2 exon
chr5:32279993-32280114
Length
85 bp
Sequences
Splice sites
3' ss Seq
AACATGTTTTTTTCTCTAAGGTG
3' ss Score
7.54
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTCTTGGATCTACATGAAAATAAGCTCACATCACTTCCAGATGAGATCGGACAGCTTTCGTCCTTGCAG
Seq A exon
GTGCTAAATGCAGAGAAAAACCAGATCAAACAGCTGCCAGACACTATAGGAGGTCTTCTGCATCTACAGACACTTAATGTAAAAG
Seq C2 exon
GGAACTGCCTTACTGTGTTGCCTGTGTCTGTGGGTCGCATGAGCAGCCTGCGGACACTCGACATAAGTGAGAACAGCATCAGAGAATTACCCAAAGAACTGGCCAGTGTTCGCACTCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(53.7=100)
A:
PF127992=LRR_4=PD(31.7=44.8),PF138551=LRR_8=PU(16.1=31.0)
C2:
PF138551=LRR_8=FE(71.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAATAAGCTCACATCACTTCCA
R:
GCGAACACTGGCCAGTTCTTT
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]