RnoEX0051210 @ rn6
Exon Skipping
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:12001524-12003365:-
Coord C1 exon
chr3:12003297-12003365
Coord A exon
chr3:12002245-12002329
Coord C2 exon
chr3:12001524-12001645
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTCACTGTTCTCTTTCTTAGGTA
3' ss Score
11.18
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTCTGGATCTCCATGACAACCAGCTGACAGCCCTTCCTGACGATATTGGGCAGCTGACAGCCCTGCAG
Seq A exon
GTATTGAATGTAGAAAGGAATCAACTGACACACCTCCCACGCTCTGTTGGGAACCTGCTGCAGCTCCAGACCCTCAACGTAAAAG
Seq C2 exon
ACAACAAGCTAAAGGAGCTTCCGGACACCCTGGGGGAGCTGCGGAGCCTGCGTACCCTCGACATCAGTGAAAATGAGATCCAGAGACTTCCCCAGATGCTGGCTCATGTGCGGACCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312-'10-10,'10-9,11-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(55.0=100)
A:
PF127992=LRR_4=PD(37.5=51.7),PF127992=LRR_4=PU(15.4=27.6)
C2:
PF127992=LRR_4=PD(79.5=85.4),PF153711=DUF4599=PU(43.4=87.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCTCCATGACAACCAGC
R:
CAGCATCTGGGGAAGTCTCTG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]