GgaEX0012879 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1943832-1946079:-
Coord C1 exon
chr17:1946011-1946079
Coord A exon
chr17:1945121-1945205
Coord C2 exon
chr17:1943832-1943953
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGTTAATATCTTAGGTC
3' ss Score
9.47
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTCTAGATCTGCATGACAACCAGCTGGCATCGCTTCCTGCTGATATTGGTCAGCTGACATCTCTTCAG
Seq A exon
GTCCTAAACCTTGAAAGGAATCTCTTAAAATGTCTTCCACAATCTATAGGGGATCTTGCCCAGCTCCAGGTCCTCAATGTGAAAG
Seq C2 exon
GCAACAAGCTGAGGGAGCTGCCTGCTACAGTGAGCGGTCTGCGGAGTTTGCGCACTCTGAATGTCAGTGAGAACCTGCTGCAGGAACTGCCAAGAGTGCTGGCTCACGTCCGCATGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'5-7,'5-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(50.0=100)
A:
PF127992=LRR_4=PD(36.4=55.2),PF127992=LRR_4=PU(20.0=31.0)
C2:
PF127992=LRR_4=PD(77.8=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCATGACAACCAGCTGG
R:
GACGTGAGCCAGCACTCTTG
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]