HsaEX6063094 @ hg19
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:25135]
Coordinates
chr9:130214208-130217333:+
Coord C1 exon
chr9:130214208-130214363
Coord A exon
chr9:130216775-130216878
Coord C2 exon
chr9:130217277-130217333
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCTCCTGTGCCCCAGGGT
3' ss Score
9.31
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CACCTGCCTTTGAAGGAGACCAGACTCCGGCTCCGCCCGGCCCGTGCCGGGTGGTCTGCGGCCCCGAGTCCGTGACCAAGCCCTCCGAGTGATCGGCCTGCCCTCGGGTGCACCCGCGGGTCCCAACGTGGGGGATCCCTCCATCCGCAAAGCCAG
Seq A exon
GGTCCTAAAGATCGCTCTGGGAAAAGGGAAGGATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTTTG
Seq C2 exon
GCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356-'1-6,'1-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138551=LRR_8=PU(17.7=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCAGACTCCGGCTCC
R:
TGAGAGCTCACATTTAGAGATGTCG
Band lengths:
195-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)