BtaEX0020830 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98196511-98198933:+
Coord C1 exon
chr11:98196511-98196670
Coord A exon
chr11:98198263-98198366
Coord C2 exon
chr11:98198877-98198933
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCTCCTCCGCCCTAGTGT
3' ss Score
9.36
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
TTCCTTCGTTTGGAGGAGACCAGACTCTGCTCAGCAGGGGATGTGCAGTGCCCAGTGGCCTGCCACCCCACGTTCATGACCAAGCCCTGCGAGTGATCGGCCTGCCTTCAGGTCCACCCGAGGGAACAACCATCAGGGACCTATTTATCTGCACAGCAAG
Seq A exon
TGTGGTGAAGATCGCTCTAGAAAAAAGGAAGGATGCCACTCTTCTTCCGGAAGCGGAAACCCAGCGATGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTCTG
Seq C2 exon
GCAAAAGAAGCTGGAGCAGATGACATTCTTGACATCTCTAAATGTGAACTCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCGTTTGGAGGAGACCA
R:
CGGAGAGTTCACATTTAGAGATGTCA
Band lengths:
214-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development