HsaEX6063094 @ hg38
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr9:127451929-127455054:+
Coord C1 exon
chr9:127451929-127452084
Coord A exon
chr9:127454496-127454599
Coord C2 exon
chr9:127454998-127455054
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCTCCTGTGCCCCAGGGT
3' ss Score
9.31
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CACCTGCCTTTGAAGGAGACCAGACTCCGGCTCCGCCCGGCCCGTGCCGGGTGGTCTGCGGCCCCGAGTCCGTGACCAAGCCCTCCGAGTGATCGGCCTGCCCTCGGGTGCACCCGCGGGTCCCAACGTGGGGGATCCCTCCATCCGCAAAGCCAG
Seq A exon
GGTCCTAAAGATCGCTCTGGGAAAAGGGAAGGATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTTTG
Seq C2 exon
GCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356-'1-5,'1-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138551=LRR_8=PU(21.2=57.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCAGACTCCGGCTCC
R:
TGAGAGCTCACATTTAGAGATGTCG
Band lengths:
195-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains