GgaEX1034259 @ galGal4
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr17:1551808-1555752:-
Coord C1 exon
chr17:1555703-1555752
Coord A exon
chr17:1553584-1553758
Coord C2 exon
chr17:1551808-1551864
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTCTCTTATCAGAGG
3' ss Score
9.9
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTAGTGTGGAGGCCCCGAGACGGGACGGGGCGTCATGACAGCGGGCGGCG
Seq A exon
AGGACAGCTCTGTAGTCCAGGTTCCACGTGCTCCAAGAGCCATCTGCCTTTATTTGTGCTGGTAGTTTGTGCCATTCAGACGGAGCTGTAGTCACAACTCAAGATGCCCCTTTTCTTCCGTAAGAAGAAACCCAGTGAAGATGCTCGGAAGCGCCTTGAATACCAAATGTGCCTG
Seq C2 exon
GCAAAAGAGGCTGGTGCCGATGATGTTCTTGACATATCCAAATGTGAACTGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'0-5,'0-1,2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGTGGAGGCCCCGAG
R:
TCTAACAGTTCACATTTGGATATGTC
Band lengths:
106-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]