DreEX6011781 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32281756-32282445:-
Coord C1 exon
chr5:32282289-32282445
Coord A exon
chr5:32281941-32282123
Coord C2 exon
chr5:32281756-32281812
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCTACTTCTATTAGTTC
3' ss Score
6.14
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTTGTTCCTGGTGTTTGTGGTGTACTGTCCGAGAGGGAGTATGCTAGGTATCACAGGACAGTAAATTGATTAAGAAACATCTCAGAGAACCTATGTTTTCATAACATATATCAGCTATAGGACTAACGGTTATTTGCGAATATCCATCGTTCAGCAG
Seq A exon
TTCAGGGCGTTCTTGGAGATTGTCAACATCACATTCAGTCAGGTTTCACACTGAACCGTCCAGTGGATGTTGTGGGGTTTTAACTAGACAAATAAAATCTCGCTAAGCCTCACGATGTTTTTGTTCAAAAAGAAAAAACCCAGTGGCGATTCCAGGAAACGTCTCGAGTACCAGCTGTGTTTG
Seq C2 exon
GCCAAAGAAGCAGGTGCTGATGACATTCTGGACATTTCTGCCTGTGAGCTTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'1-3,'1-0,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCTGGTGTTTGTGGTGT
R:
CTCTGAAAGCTCACAGGCAGA
Band lengths:
212-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]