MmuEX6100658 @ mm10
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32958158-32961255:-
Coord C1 exon
chr2:32961044-32961255
Coord A exon
chr2:32959517-32959613
Coord C2 exon
chr2:32958158-32958214
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTGCCGTCCTCTAGGGT
3' ss Score
10.75
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AATCTCGAGACTTTGTCATCCTGAGTTGCGTGTCTTTCTGAAATTTAAAGTTTCGGTGCTCACTTCTATGTTTGAAGGAGACCGGACACCAGCTCAGCTTTTGGGGGCCAATGGTTTGTATCTGTGGCCAAGTCTTCGGAGTGACTGGCCTACCTTGAGGTCCACCCAAGAATCGGAACATCGGTGGAGGACCTCCCCATCCACAGAGCCAG
Seq A exon
GGTCCAGAAGAGCTCACACCGGAGGATGCCCCTCTTCTTTCGGAAGCGGAAACCCAGTGAGGAGGCTCGAAAACGCCTGGAGTACCAGATGTGTCTG
Seq C2 exon
GCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-'5-9,'5-7,10-9=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138551=LRR_8=PU(21.2=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAAGGAGACCGGACACC
R:
GAGAATGTCATCTGCCCCAGC
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types