HsaEX6063436 @ hg19
Exon Skipping
Gene
ENSG00000136878 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:12619]
Coordinates
chr9:132623216-132625578:+
Coord C1 exon
chr9:132623216-132623312
Coord A exon
chr9:132623822-132623891
Coord C2 exon
chr9:132625465-132625578
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCGTTGTGTTTATTTCCCAGGCC
3' ss Score
9.62
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCCTATTGCTGTGGCTGATGAAGGAGAGTCTGAGTCAGAGGACGATGACCTGAAACCTCGAG
Seq A exon
GCCTCACGGGCATGAAGAACCTCGGGAACTCCTGCTACATGAACGCTGCCCTGCAGGCCCTGTCCAATTG
Seq C2 exon
CCCGCCGCTGACTCAGTTCTTCTTGGAGTGTGGCGGCCTGGTGCGCACAGATAAGAAGCCAGCCCTGTGCAAGAGCTACCAGAAGCTGGTCTCTGAGGTCTGGCATAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136878-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0044324=UCH=PU(4.1=91.7)
C2:
PF0044324=UCH=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCCTATTGCTGTGGCT
R:
CCAGACCTCAGAGACCAGCTT
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)