GgaEX0005525 @ galGal4
Exon Skipping
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5714095-5715134:+
Coord C1 exon
chr17:5714095-5714191
Coord A exon
chr17:5714378-5714447
Coord C2 exon
chr17:5715021-5715134
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTGTTTGTGCTTTAGGCC
3' ss Score
9.98
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATTCTCCATTGCCTGCTCACCCTTTGAAAGCTGTTCCAATTGCAGTGGCTGATGAAGGCGAATCCGAATCAGAGGACGATGACTTGAAACCAAGAG
Seq A exon
GCCTTACTGGAATGAAAAATCTTGGGAACTCCTGCTACATGAATGCAGCACTTCAGGCTCTCTCTAACTG
Seq C2 exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.558 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0044324=UCH=PU(24.7=91.7)
C2:
PF0044324=UCH=FE(42.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCAATTGCAGTGGCTGA
R:
ATGCCAAACCTCAGACACCAG
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]