BtaEX6046659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020311 | USP20
Description
Bos taurus ubiquitin specific peptidase 20 (USP20), mRNA. [Source:RefSeq mRNA;Acc:NM_001105333]
Coordinates
chr11:100258652-100260275:+
Coord C1 exon
chr11:100258652-100258748
Coord A exon
chr11:100259017-100259086
Coord C2 exon
chr11:100260162-100260275
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGCTGGTCCCCAGGCC
3' ss Score
9.87
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GACTCTCCGCCACCCTCCCACCCTCTGAAAGCCGTCCCCATCGCTGTGGCGGACGAAGGAGAGTCCGAGTCGGAGGACGACGACCTGAAGCCACGAG
Seq A exon
GCCTCACGGGCATGAAGAACCTCGGCAACTCCTGCTACATGAATGCGGCCTTGCAGGCTCTGTCCAACTG
Seq C2 exon
CCCCCCGCTCACCCAGTTCTTCTTGGAGTGTGGAGGCCTGGTCCGCACAGACAAGAAGCCAGCCCTGTGCAAAAGTTATCAGAAGCTGGTCTCTGAGGTCTGGCACAGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020311-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0044324=UCH=PU(4.1=91.7)
C2:
PF0044324=UCH=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAAAGCCGTCCCCATC
R:
CCAGACCTCAGAGACCAGCTT
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]