RnoEX0097085 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9837097-9839351:+
Coord C1 exon
chr3:9837097-9837193
Coord A exon
chr3:9837598-9837667
Coord C2 exon
chr3:9839238-9839351
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCATGTTGCTTTTAGGCC
3' ss Score
8.75
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GACTCCCCACCACCCTGCCACCCTCTGAAAGCTGTCCCTATTGCCGTGGCTGATGAGGGAGAGTCTGAGTCTGAGGACGATGACCTGAAGCCTCGAG
Seq A exon
GCCTCACAGGCATGAAGAACCTGGGGAACTCCTGTTACATGAATGCTGCCCTGCAGGCCTTGTCCAATTG
Seq C2 exon
CCCCCCACTCACCCAGTTCTTCCTGGAGTGTGGTGGCCTGGTGCGAACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTCTGGCACAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710-'17-15,'17-13,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0044324=UCH=PU(82.6=95.0)
C2:
PF0044324=UCH=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGCCGTGGCTGATGAGG
R:
CGTTTCTTGTGCCAGACCTCA
Band lengths:
174-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]