MmuEX0050857 @ mm10
Exon Skipping
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:31004404-31006497:+
Coord C1 exon
chr2:31004404-31004500
Coord A exon
chr2:31004932-31005001
Coord C2 exon
chr2:31006384-31006497
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCGTGTTGTTTGTAGGCC
3' ss Score
9.85
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GACTCCCCACCACCCTCCCACCCGCTGAAAGCTGTCCCTATTGCTGTGGCTGATGAAGGAGAGTCTGAGTCTGAGGATGACGACCTGAAGCCTCGAG
Seq A exon
GCCTCACAGGCATGAAGAACCTGGGAAACTCCTGTTACATGAATGCTGCCCTGCAGGCCTTGTCCAATTG
Seq C2 exon
CCCCCCGCTCACCCAGTTCTTCCTGGAGTGTGGTGGTCTGGTGCGCACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTGTGGCACAAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0044324=UCH=PU(32.8=91.7)
C2:
PF0044324=UCH=PD(32.4=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCTATTGCTGTGGCTG
R:
TCTTGTGCCACACCTCAGAGA
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types