HsaEX6064270 @ hg38
Exon Skipping
Gene
ENSG00000188986 | NELFB
Description
negative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]
Coordinates
chr9:137272081-137273546:+
Coord C1 exon
chr9:137272081-137272222
Coord A exon
chr9:137272511-137272615
Coord C2 exon
chr9:137272782-137273546
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCACGGCCTTTTCCAGGAAGGAG
3' ss Score
-2.49
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGAGACCTTTGGCGACTTGGCCTTTGGCGACATCTTCCTCCACCTGCTCACGGGCAACCTTGCGCTGCTGGCCGACGAATTTGCCCTTGAGGACTTCTGCAGCAGCCTCTTCGATGGCTTCTTCCTCACCGCCTCTCCAAG
Seq A exon
GAGAACGTGCACCGGCACGCGCTGCGGCTCCTCATTCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGCAGAAGGCCCTGGAGCCTACAGGCCAG
Seq C2 exon
AGCGGAGAGGCAGTGAAGGAGCTTTACTCCCAGCTCGGCGAGAAGCTGGAACAGCTGGATCACCGGAAGCCCAGCCCGGCACAGGCTGCGGAGACGCCGGCCCTGGAGCTGCCCCTCCCCAGCGTGCCCGCCCCTGCCCCGCTCTGAGGGCCCTCCAGACCTGCTCGGGTGCTGGGGCCATGCCGAGTCGCGGCCCTGCTCAGCCGGAAGAGGCTCCCGGACCTGGATGTACAGGGCAGTCTCTCTTCCCGGGGCTATGGCTGGGCCTGTCCTGCCGTCATGGCCCCCTGCTTCCTGCTCCTTGGAGCTGGCTCCCGGACCTTGCCCACCATCCATGCAGTGGCTCCCAGGGCAGAGCCTCTCCTTGTACTTTGGCAGCCATAGAAAGCGTGCTCATTTTCTGTTTTCCTGTGTTAGGAAAAAACCACCTGTTTTCCAAGGGGAGAGGGCGGGGCCTGAGGGTGGGGGCGGGGCCTCTTCATTGGCCCAGCTTGGCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188986-'25-36,'25-35,26-36
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.198 C2=0.616
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(33.3=100)
A:
PF062098=COBRA1=FE(25.5=100)
C2:
PF062098=COBRA1=PD(33.3=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCCTCACCGCCTCTCC
R:
CTGTACATCCAGGTCCGGGAG
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains