GgaEX6014841 @ galGal4
Exon Skipping
Gene
ENSGALG00000008532 | COBRA1
Description
negative elongation factor B [Source:RefSeq peptide;Acc:NP_001006202]
Coordinates
chr17:1906904-1908429:+
Coord C1 exon
chr17:1906904-1907045
Coord A exon
chr17:1907623-1907731
Coord C2 exon
chr17:1907980-1908429
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTTGATTGTTTTTTTTTCAGAAA
3' ss Score
8.65
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TCGAGACATTCAGCGACTTGGCCTTCAGTGATATATTTCTGCATCTGCTCACTGGTAACCTCACACTGCTGGGTGATGAATTTGCAGTTGAAGAGTTCTGCACCAGTCTCTTTGATGGCTTCTTTCTCACTGCATGCTCAAG
Seq A exon
AAAGGAGAATGTACACAGACATGTGCTAAGATTGCTGCTTCATCTGCATCACAAAGTGGTGCCTGCCAAATTAGAGTCTCTCCAGAAGGCTTTGGAACCCACCAAACAG
Seq C2 exon
AGTGGGGAGGCTGTGAAGGAGCTTCATAACCAGCTCACTGAGAAACTGGAGCTTCGCAAGCCCAGCCCTGCCGAAGTGACCGAGACTCCCTCCATGGAACTGCCCTTGCCCACTGTGCCCACACCAGCCTCACGCTGAGCTGTGTTTGTCTTGCAAGAGTGAGACAGCAAAACAAGCCTAGTGCTCAGCAGCCTGGAGGCGCTGTACTGCCTTGTCAAGTGTCTCTGCCCACGGGGTGGAAGCAAAGAAAAAATAGCCACTGAAAAAGCTCTTTCGGGAAACACTGCAGTTTACCCAACTGTCTCTTGCTGGTTAGAAAACTCTGTATGCAGTGCATTGCAGAGGTTTACTTTTCTTAAAGGTAGCTGAGTGAGTGTCTTCTTGTAGCTCTACTTACAACTGACTGTACAATTCTTTTTTTTTTTTTTGAAAAAGAAAAGGCATATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'18-22,'18-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.867
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(10.0=100)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=PD(9.3=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACCTCACACTGCTGGGTG
R:
GCAAGACAAACACAGCTCAGC
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]