BtaEX0009489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105843377-105844061:-
Coord C1 exon
chr11:105843920-105844061
Coord A exon
chr11:105843702-105843810
Coord C2 exon
chr11:105843377-105843553
Length
109 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTGCTTCTCCCCCAGGAA
3' ss Score
9.07
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGGAGACCTTCGGCGACCTGGCGTTCGGGGACATCTTCCTGCACCTGCTCACGGGCAGCCTGGCCCTGCTGGCCGACGAGTTCGCCCTGGAGGACTTCTGCAGCAGCCTCTTCGACGGCTTCCTCCTCACCGCCTCCCCAAG
Seq A exon
GAAGGAGAGCGTGCAGCGGCACGTCCTGCGGCTCCTGCTGCACCTGCACCACCGGGTGGCCCCGTCCAAGCTGGAGGCGCTGCAGAAGGCACTGGAGCCCACGGGCCAG
Seq C2 exon
AGCGGAGAGGCGGTGAAGGAGCTGTATTCCCAGCTTGGAGAGAAGCTCGAGCAGCTGGACCACCGGAAGCCTAGCCCAGCCCAGGCCCCAGAGACACCAGCCCTGGAGCTGCCTCTGCCGGCTGTGCCCGCCCCGGCTGTGCTCTGAGGCTCTGCTTGGGGCCGCTCAGGGTGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.417
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(9.9=100)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=PD(9.9=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCTTCGGCGACCT
R:
CAGGGCTGGTGTCTCTGGG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development