RnoEX0059302 @ rn6
Exon Skipping
Gene
ENSRNOG00000009377 | Nelfb
Description
negative elongation factor complex member B [Source:RGD Symbol;Acc:1307832]
Coordinates
chr3:2414451-2415895:-
Coord C1 exon
chr3:2415754-2415895
Coord A exon
chr3:2415375-2415483
Coord C2 exon
chr3:2414451-2415180
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCTCCACTGATCTCTCCCAGGAA
3' ss Score
7.26
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TGGAAACCTTTGGTGACCTGGCCTTCAGTGACATCTTCCTCCACCTACTCACTGGGAGTCTGGCGCTGTTGGCTGATGAATTTGCCCTGGAGGACTTTTGCAGCAGCCTCTTTGATGGCTTCTTCCTCACTGCCTCTCCCAG
Seq A exon
GAAGGACAATGTACACCGCCATGTGCTGAGGCTTCTCCTTCACTTGCATGCGAGAGTGGCCCCTTCCAAGCTGGAGGCGTTGCAGAAGGCGCTGGAGCCCACGGGCCAG
Seq C2 exon
AGCGGGGAGGCTGTGAAGGAGCTCTACTCCCAGCTTGGTGAGAAGTTGGAGCAGTTGGACCATCGGAAGCCCAGTCCTCCCCAAGCTGCAGAGACCCCCGCACTGGAGCTGCCTCTTCCCAGTGTGCCTGCTCCAGCCGCACTGTGACGCTCTGGGGAACTGTCTGACGGGCGTGCCCTGATGGAAGGGCACCCTAGTTGGCCAGGGTGTAGGCTGAGCCGAGAGGGCTGTTCCTTGGCAAGGTACCTCCTCCTCTGAGTTGCTGCCAGGAGCTGGTCCCAAAAGGTCTCGATAGTCTCCTTGCACATCAAAGGGGGCCCATGATGGCATGGTGGGACTTGGCCCCTGCTTGACCCTGGCAGAGGTGGATGGTGGTTGGGATATAGGGAAAGCAGTGGGCAAAGGCCTGACTGACATTCAGTCTGGACAAAGTCCAAGGAGAAAGGAATGCTGGGTTCACCAAAGCAGGTGCCGGGCCTGATGTCTCAAGCACAGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009377-'18-31,'18-29,20-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.479
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(9.9=100)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=PD(9.9=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTTTGCAGCAGCCTCTT
R:
AACTAGGGTGCCCTTCCATCA
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]