MmuEX6099421 @ mm9
Exon Skipping
Gene
ENSMUSG00000013465 | Cobra1
Description
cofactor of BRCA1 [Source:MGI Symbol;Acc:MGI:1931035]
Coordinates
chr2:25055232-25056706:-
Coord C1 exon
chr2:25056565-25056706
Coord A exon
chr2:25056179-25056287
Coord C2 exon
chr2:25055232-25055986
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCTCCACTGATCTCTTCCAGGAA
3' ss Score
9.02
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGAAACGTTTGGTGACCTGGCCTTCAGTGACATCTTTCTCCACCTGCTCACTGGGAGCCTGGTACTGCTTGCTGATGAATTTGCCCTGGAGGATTTCTGCAGCAGCCTCTTTGATGGCTTCTTCCTCACTGCCTCTCCCAG
Seq A exon
GAAGGAGAATGTGCACCGTCATGTGCTGAGGCTTCTCCTCCACTTGCATGCAAGAGTGGCCCCTTCCAAGCTGGAGGCATTGCAGAAGGCTCTGGAGCCCACAGGCCAG
Seq C2 exon
AGCGGGGAGGCCGTGAAGGAGCTCTACTCCCAGCTTGGTGAGAAGTTGGAGCAGTTAGACCATCGAAAGCCCAGTCCTACCCAAGCTGCAGAGACACCAGCACTGGATCTGCCTCTTCCCAGCGTGCCTGCTCCAGCCACACTGTGAGGCTGTGGAGAACTGAAACTGTTTGACAGTGGTGCCCTATGGAAGGGCACCTAGTTGGCTAGGGGTGTAGGCTGAGCTGAGAGGGGTGTTCTTTGGCAAGGTTCTCCCTCCTCTAGTTTCTCCCAGGAGCTGGTCCCAAAAGGTCCTCCCTCAGTGGTCTACTTGCATATCATAGGGGGCCCTTGATGTCATGGTGGGACTTGGCCCCTGCTTGACCCTGGCAGAGGTGGATGGTGATTGGGATATAGGAAAAGCAGTGGGCAGAGGCCTGACTGACCTGATATTCAATCTGCACAAAGTCCAAGGTATGCTAGGTTCACCAAAGTAGATTTGCTGGACCTGATCCCCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013465-'15-21,'15-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.500
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(32.6=100),PF069126=DUF1275=PD(78.6=91.7)
A:
PF062098=COBRA1=FE(7.6=100)
C2:
PF062098=COBRA1=PD(9.9=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTTCTTCCTCACTGCC
R:
GCCTACACCCCTAGCCAACTA
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: