HsaEX6064487 @ hg19
Exon Skipping
Gene
ENSG00000151062 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:20202]
Coordinates
chr12:1987481-1989047:-
Coord C1 exon
chr12:1988970-1989047
Coord A exon
chr12:1988122-1988202
Coord C2 exon
chr12:1987481-1987555
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTCTTTCCTTCCAGCGA
3' ss Score
11.23
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCCTCAGCTCGCAGGCTCAGAGCCTGACACTGCTCACCACTGTGGCCATGCCAGTCTTCAGCAAGAAGAACGAAACG
Seq A exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCAGATGTGGCCCTGAGAGAGCTGATGAAGCTGGCGCCCCGGTACAAG
Seq C2 exon
CTTGGAGTGCACGGATACGCCTTTCTGAACACCAACAATGGCTACATCCTCTCCCATCCCGACCTCCGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062-'14-16,'14-14,15-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.093
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(26.6=100)
A:
PF0274313=Cache_1=FE(27.7=100)
C2:
PF0274313=Cache_1=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGCTCGCAGGCTC
R:
GAGGTCGGGATGGGAGAGGAT
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)