MmuEX6006557 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119274225-119281706:+
Coord C1 exon
chr6:119274225-119274358
Coord A exon
chr6:119277820-119277900
Coord C2 exon
chr6:119281620-119281706
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTGCACTGTCCCTTCTAGAGA
3' ss Score
8.61
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTACTACACACAGATCTCCACACTGGCGGATGCGCAGGAGAGCGTGATGGAGTACCTGCATGTGCTTAGCCGCCCCATGGTCATCAACCATGACCACGACATCATCTGGACAGAGGCTTACATGGACAGCCGG
Seq A exon
AGATCCCATGGCATTCTCCTGGGTGTAGTGGGCTCTGACGTGACCCTAAGAGAGCTCATGAAGCTGGCACCCCGATATAAG
Seq C2 exon
TACAGAGAAGGCAAGAAGCTGAGACCCAAACCCAACTACAACAGTGTGGACCTCTCAGAAGTGGAGTGGGAGGACCAAGCTGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(12.1=17.8)
A:
PF0274313=Cache_1=FE(27.7=100)
C2:
PF0274313=Cache_1=PD(6.4=20.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCGTGATGGAGTACCT
R:
CCCACTCCACTTCTGAGAGGT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types