RnoEX6014844 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151336220-151337388:+
Coord C1 exon
chr4:151336220-151336297
Coord A exon
chr4:151336952-151337032
Coord C2 exon
chr4:151337314-151337388
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTGCACTGTTCCTTCTAGCGA
3' ss Score
7.72
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCCTTACCTCAGAGGCACAAAGCCTGATGCTCCTCACCACAGTGGCCATGCCAGTCTTCAGCAAAAAGAACGAAACA
Seq A exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCTGACGTGACCCTAAGAGAGCTCATGAAGCTGGCACCCCGATATAAG
Seq C2 exon
CTCGGGGTACATGGCTATGCCTTTTTGAACACTAACAATGGCTACATCCTCTCTCATCCTGACCTCCGACCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(26.6=100)
A:
PF0274313=Cache_1=FE(27.7=100)
C2:
PF0274313=Cache_1=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACCTCAGAGGCACAAAGC
R:
CAAAGGTCGGAGGTCAGGATG
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]