GgaEX6002689 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63186663-63190359:-
Coord C1 exon
chr1:63190282-63190359
Coord A exon
chr1:63188917-63188997
Coord C2 exon
chr1:63186663-63186737
Length
81 bp
Sequences
Splice sites
3' ss Seq
AATGAATTCTTGTTTTCAAGCGG
3' ss Score
4.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTCTTTGCATCTCAGGCTCAAAGTCTGTTGCTCATGACAACAGTGGCTATGCCAGTCTTCAGCAAGAAGAATGAGACG
Seq A exon
CGGTCTCACGGCATTCTCCTGGGTGTGGTGGGCTCTGATGTGCCACTGAGAGAGTTGTTAAAACTTGCTCCACGTTATAAG
Seq C2 exon
CTGGGTGTCCATGGATATGCCTTTCTGAACACCAACAATGGCTACATCCTCTCACACCCAGACCTCCGTCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(25.0=100)
A:
PF0274313=Cache_1=FE(26.0=100)
C2:
PF0274313=Cache_1=FE(24.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCATCTCAGGCTCAAAGT
R:
AAAGGACGGAGGTCTGGGTG
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]