HsaEX6064487 @ hg38
Exon Skipping
Gene
ENSG00000151062 | CACNA2D4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr12:1878315-1879881:-
Coord C1 exon
chr12:1879804-1879881
Coord A exon
chr12:1878956-1879036
Coord C2 exon
chr12:1878315-1878389
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTCTTTCCTTCCAGCGA
3' ss Score
11.23
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCCTCAGCTCGCAGGCTCAGAGCCTGACACTGCTCACCACTGTGGCCATGCCAGTCTTCAGCAAGAAGAACGAAACG
Seq A exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCAGATGTGGCCCTGAGAGAGCTGATGAAGCTGGCGCCCCGGTACAAG
Seq C2 exon
CTTGGAGTGCACGGATACGCCTTTCTGAACACCAACAATGGCTACATCCTCTCCCATCCCGACCTCCGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062-'20-28,'20-25,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.107 C2=0.159
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(26.6=100)
A:
PF0274313=Cache_1=FE(27.7=100)
C2:
PF0274313=Cache_1=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGCTCGCAGGCTC
R:
GAGGTCGGGATGGGAGAGGAT
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains